# Copyright 1999-2020 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Functional similarities'
KEYWORDS="~amd64"
SRC_URI="http://master.bioconductor.org/packages/3.9/bioc/src/contrib/BioCor_1.8.1.tar.gz"
LICENSE='MIT'

IUSE="${IUSE-} r_suggests_biocstyle r_suggests_boot r_suggests_hmisc
	r_suggests_knitr r_suggests_rmarkdown r_suggests_spelling
	r_suggests_testthat"
R_SUGGESTS="
	r_suggests_biocstyle? ( sci-BIOC/BiocStyle )
	r_suggests_boot? ( virtual/boot )
	r_suggests_hmisc? ( sci-CRAN/Hmisc )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_spelling? ( sci-CRAN/spelling )
	r_suggests_testthat? ( sci-CRAN/testthat )
"
DEPEND=">=dev-lang/R-3.4.0
	sci-BIOC/BiocParallel
	virtual/Matrix
	sci-BIOC/GSEABase
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=(
	'airway'
	'org.Hs.eg.db'
	'reactome.db'
	'sci-BIOC/DESeq2'
	'sci-BIOC/GOSemSim'
	'sci-CRAN/WGCNA'
	'targetscan.Hs.eg.db'
)