# Copyright 1999-2022 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Analysis with Profile Hidden Markov Models'
KEYWORDS="~amd64"
SRC_URI="http://cran.r-project.org/src/contrib/aphid_1.3.5.tar.gz"
LICENSE='GPL-3'

IUSE="${IUSE-} r_suggests_ape r_suggests_knitr r_suggests_qpdf
	r_suggests_rmarkdown r_suggests_testthat"
R_SUGGESTS="
	r_suggests_ape? ( >=sci-CRAN/ape-4.0 )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_qpdf? ( sci-CRAN/qpdf )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_testthat? ( sci-CRAN/testthat )
"
DEPEND=">=dev-lang/R-3.0.0
	>=sci-CRAN/Rcpp-0.12.5
	>=sci-CRAN/kmer-1.0.0
	sci-CRAN/openssl
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	${R_SUGGESTS-}
"