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sci-biology/imagej

Image Processing and Analysis in Java

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    doc plugins debug

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    Overlay: science
  • imagej-1.54h-r1
    ~amd64
    doc plugins debug

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ChangeLog

commit c5701b9a123d9cf9ebdf13570b3b92cabae54fc2
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Dec 20 10:46:29 2023 +0100

sci-biology/imagej: revbump 1.54h

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 9d05db0ba02b6bf5638da71761558eaa5b7face4
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 11:32:27 2023 -0800

sci-biology/imagej: drop 1.54g

Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1227
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit be482279cf5432b33ae455e27c427919392a8764
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 08:02:53 2023 -0800

sci-biology/imagej: bump version imagej sources and plugins

* ImageJ version bump 1.53t to 1.54g from NIH sources
* plugins version bump 153 to 154

Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 4e29aee84176d30527862de23b0fe7c5c049c70c
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Mon Dec 18 15:21:17 2023 -0800

sci-biology/imagej: add 1.54h, drop 1.54f

Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1224
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 2d9c80a90fcc0affb4f85daba6fcfef4b2831b64
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Thu Aug 17 12:20:50 2023 -0700

sci-biology/imagej: add 1.54f, drop 1.54d

Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1213
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit f6ee8374ed488f3621b2193345c0039cd73d06e9
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sat Jul 8 11:23:30 2023 -0700

sci-biology/imagej: Add unstable git versions

Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Co-authored-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Closes: https://github.com/gentoo/sci/pull/1198
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 5cf6be39e39840cc88e4dfa86ed372ff85736e95
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jul 2 14:43:21 2023 -0700

sci-biology/imagej: bump to 1.53t

Closes: https://github.com/gentoo/sci/pull/1197
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 2bb3e74a499bc39723588d1affa29204bf82a78f
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 26 16:00:08 2021 +0100

sci-biology/imagej: version bump, EAPI bump, add keywords

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 595d87fc830c18593784b5634cff7139d17028e3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:21:31 2021 +0100

sci-biology/imagej: depend on app-arch/unzip

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit db6c1666f10c9df6f91a38a45fcba0da7424cdfd
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:28:36 2017 +0200

sci-biology/imagej: Do not call external programs in global scope

Closes: https://bugs.gentoo.org/show_bug.cgi?id=630214
Package-Manager: Portage-2.3.8, Repoman-2.3.3

commit ce9dbd43bb73dc4b69fdc4ccf1cfd38e5485b029
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:51:20 2017 +0100

sci-biology/imagej: adjust einfo message accordingly

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 7124d48942d4162762b188a131a5f1f186e1f460
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:49:15 2017 +0100

sci-biology/imagej: change default IJ_HOME value to $HOME/.imagej

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 11a62943a13d8d1837f530fa234480991589a501
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:35:06 2017 +0100

sci-biology/imagej: there is no separate /proc/meminfo in EPREFIXed hosts

Add link to github issue. Remove CVS header line.

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 395c7e7490baf0d7a6e6550fd47d966c285dc171
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 15 22:38:28 2017 +0100

sci-biology/imagej: new package

Ebuild taken over from https://bugs.gentoo.org/show_bug.cgi?id=112275

src_compile screams about:

>>> Compiling source in /scratch/var/tmp/portage/sci-biology/imagej-1.51k/work/source ...
!!! ERROR: Package jython was not found!

but it builds fine using Apache ant.

ImageJ2 is using maven as a build system ( https://imagej.net/ImageJ2 )

Package-Manager: Portage-2.3.3, Repoman-2.3.1