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sci-biology/samtools

Utilities for analysing and manipulating the SAM/BAM alignment formats

Screenshots

  • samtools-1.9
    ~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
    examples python_targets_python2_7

    View      Download      Browse     License: MIT   
    Overlay: gentoo (distro)
  • samtools-1.5
    ~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
    examples python_targets_python2_7

    View      Download      Browse     License: MIT   
    Overlay: gentoo (distro)
  • samtools-0.1.20-r3
    ~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
    examples python_targets_python2_7

    View      Download      Browse     License: MIT   
    Overlay: gentoo (distro)

Runtime Dependencies

samtools-1.9

dev-lang/perl
=sci-libs/htslib-1.9*
sys-libs/ncurses:0=
sys-libs/zlib:=

python_targets_python2_7?
      ( >=dev-lang/python-2.7.5-r2:2.7 )


>=dev-lang/python-exec-2:=[python_targets_python2_7
      (-)
?
,-python_single_target_jython2_7
      (-)
,-python_single_target_pypy
      (-)
,-python_single_target_pypy3
      (-)
,-python_single_target_python3_4
      (-)
,-python_single_target_python3_5
      (-)
,-python_single_target_python3_6
      (-)
,-python_single_target_python3_7
      (-)
,python_single_target_python2_7
      (+)
]

samtools-1.5

dev-lang/perl
=sci-libs/htslib-1.5*
sys-libs/ncurses:0=
sys-libs/zlib

python_targets_python2_7?
      ( >=dev-lang/python-2.7.5-r2:2.7 )


>=dev-lang/python-exec-2:=[python_targets_python2_7
      (-)
?
,-python_single_target_python2_7
      (-)
]

samtools-0.1.20-r3


python_targets_python2_7?
      ( >=dev-lang/python-2.7.5-r2:2.7 )


>=dev-lang/python-exec-2:=[python_targets_python2_7
      (-)
?
,-python_single_target_jython2_7
      (-)
,-python_single_target_pypy
      (-)
,-python_single_target_pypy3
      (-)
,-python_single_target_python3_4
      (-)
,-python_single_target_python3_5
      (-)
,-python_single_target_python3_6
      (-)
,python_single_target_python2_7
      (+)
]
sys-libs/ncurses:0=
dev-lang/perl