gpo.zugaina.org

Search Portage & Overlays:

sci-biology/dcm2niix

DICOM to NIfTI converter

Screenshots

  • dcm2niix-1.0.20210317
    ~amd64 ~x86
    static system-jpeg +jpeg-ls jpeg2k

    View      Download      Browse     License: BSD   
    Overlay: science
  • dcm2niix-1.0.20201102
    ~amd64 ~x86
    static system-jpeg +jpeg-ls jpeg2k

    View      Download      Browse     License: BSD   
    Overlay: science

ChangeLog

commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500

add github remote-id when possible

Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 699ded99a805c8d2c23a144efeeacfeb3883b7bd
Author: Lucas Mitrak <lucas@lucasmitrak.com>
Date: Fri Jun 11 10:07:28 2021 -0400

sci-biology/dcm2niix: add version 1.0.20210317

* sci-biology/dcm2niix version 1.0.20210317 bump to latest

This commit was tested in a docker image with dev-util/ebuildtester.
This commit was written, tested, and submitted by Lucas Mitrak.

Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com>
Closes: https://github.com/gentoo/sci/pull/1093
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 8cde5c549479110f27e426f97ee6011542423ceb
Author: Lucas Mitrak <lucas@lucasmitrak.com>
Date: Fri Jun 11 08:15:47 2021 -0400

sci-biology/dcm2niix: add USE flags, dependencies, src_configure

* Add static system-jpeg +jpeg-ls jpeg2k use flags and implement them

Currently, sci-biology/dcm2niix does not take advantage of many
of the package's potential features. These potential features include
a static runtime, using the system-wide media-libs/libjpeg-turbo
instead of bundled compact NanoJPEG decoder, enabling JPEG-LS using
the bundled CharLS library, and enabling JPEG2000 support. These are
important, especially since the static runtime is enabled by default
and JPEG-LS can be enabled without any downside. This commit adds
these USE flags and their implementation in the dependencies and in
src_configure. The naming of the use flags follow the same naming
convention found elsewhere. For example, system-jpeg is the same
as thunderbird, firefox, and seamonkey. In addition, jpeg-ls is the
only possible name for the JPEG-LS transfer syntaxes. These two
package-specific USE flag names were added to metadata.xml.
With this commit, the use flags will be added to the package.
Without this commit, the package will not have these potential
features.
This commit was tested in a docker image with dev-util/ebuildtester.
This commit was written, tested, and submitted by Lucas Mitrak.
Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com>
Closes: https://github.com/gentoo/sci/pull/1092

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 877cafa591695d148ce3a915043b005d320ce1bf
Author: Lucas Mitrak <lucas@lucasmitrak.com>
Date: Thu Jun 10 17:11:21 2021 -0400

sci-biology/dcm2niix: add patch

* Disable finding git in cmake
* Add patch to ebuild

Currently, sci-biology/dcm2niix will not compile if git is not found.
The patch dcm2niix-disable_find_git.patch comments out the lines which
attempt to find git and require it to be found. With this patch, the
package will compile correctly. Without this patch, cmake will throw
an error if git is not found.
This commit was tested in a docker image with dev-util/ebuildtester.
This commit was written, tested, and submitted by Lucas Mitrak.

Closes: https://bugs.gentoo.org/755746
Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com>
Closes: https://github.com/gentoo/sci/pull/1091
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 7cddb5d856a4d995ca9ccb57674c827fe2678e32
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sun Jan 24 15:12:13 2021 +0100

sci-biology/dcm2niix: version bump, cmake-utils --> cmake,

fix optfeature

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 3e76637df474b35297300498482d198b0ef70de8
Author: Horea Christian <chr@chymera.eu>
Date: Fri Dec 18 03:15:30 2020 -0500

Updated developer email address.

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 31edb5fccb73d7f4542f644909527f8a58c56049
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 1 08:04:41 2020 -0400

sci-biology/dcm2niix: new package

Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>