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sci-biology/deeptools

Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig

Screenshots

  • deeptools-3.5.1
    ~amd64
    doc python_targets_python3_10 python_targets_python3_11

    View      Download      Browse     License: BSD   
    Overlay: science
  • deeptools-3.5.0
    ~amd64
    doc python_targets_python3_10 python_targets_python3_11

    View      Download      Browse     License: BSD   
    Overlay: science

ChangeLog

commit 17688a432b33d4ce2ecb5fe1cbc25e7e36efe288
Author: Horea Christian <chr@chymera.eu>
Date: Wed Feb 28 21:05:41 2024 -0500

sci-biology/deeptools: dropped ~x86, added PEP517

Signed-off-by: Horea Christian <chr@chymera.eu>

commit d48974481a1dda0471421ee005826b8be5457d2f
Author: Horea Christian <chr@chymera.eu>
Date: Thu Feb 16 02:42:48 2023 -0500

sci-biology/*: updated doc package name

Signed-off-by: Horea Christian <chr@chymera.eu>

commit e77cdd7196f6fe5a0c488260fd37a76bd9ea7f8c
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jan 13 03:53:46 2023 -0500

sci-biology/deeptools: deprecating tests

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 701845a53aaac429eca917f44a0de89e5a7b4024
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jan 13 03:53:00 2023 -0500

sci-biology/deeptools: add 3.5.1

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 7d409d7497bc831fda6854cb3b511986001e3d86
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jan 13 03:50:33 2023 -0500

sci-biology/deeptools: update EAPI 7 -> 8

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 76926ef29fca81c7d72833654c27f9dccc09358c
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Jan 2 14:35:22 2021 +0100

sci-biology/deeptools: version bump, bump py targets, enable sphinx

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Signed-off-by: Horea Christian <chr@chymera.eu>

commit db8050af46235f9b1acd2fb76583516a92576f6d
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Thu Sep 24 15:53:32 2020 +0000

dev-python/scipy: mass dependency name update

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 021ac334c980bba7a50590d2dd6c7345a3c67e39
Author: Horea Christian <chr@chymera.eu>
Date: Sun Sep 13 17:10:22 2020 -0400

sci-biology/deeptools: QA fix: KEYWORDS and conditional definition

Package-Manager: Portage-3.0.6, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 7427cd98637c28d8ca30cc61094c980034113dfb
Author: Horea Christian <chr@chymera.eu>
Date: Sun Sep 13 16:39:57 2020 -0400

sci-biology/deeptools: QA fix: EAPI 7, git-r3 eclass, copyright bump

Package-Manager: Portage-3.0.6, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b0176e52f19303e32d2797d6b41273a70dfb2b2c
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Mar 31 23:10:09 2017 +0200

sci-biology/deeptools: add new package

Package-Manager: Portage-2.3.5, Repoman-2.3.1

commit 4647f40e12c546cd0b18b1966acd944fc8a21641
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Mar 31 23:00:05 2017 +0200

Revert "sci-biology/deeptools: add a new package"

This reverts commit 81a1355ea065924e0c6426772af7c16d90432ccd.

commit 81a1355ea065924e0c6426772af7c16d90432ccd
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Mar 31 22:51:57 2017 +0200

sci-biology/deeptools: add a new package

Package-Manager: Portage-2.3.5, Repoman-2.3.1