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sci-biology/freebayes

Bayesian gen. variant detector to find short polymorphisms

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ChangeLog

commit 3135d13c5e61485a195eeade8c0486176dd83264
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 12:04:43 2021 +0100

sci-biology/freebayes: version bump 1.3.5, EAPI bump

fix build, use the meson build file

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 3a5f9397ff4676cca0e05d3a89022af10ed8a044
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Jan 20 22:25:21 2018 +0100

sci-biology/freebayes: switch git:// to https://

Package-Manager: Portage-2.3.19, Repoman-2.3.6

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit aa9b6b16359dd555a865114f42119883ed03fd81
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Apr 7 01:23:28 2017 +0200

sci-biology/freebayes: use https instead of git protocol

Package-Manager: Portage-2.3.5, Repoman-2.3.1

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 82ed45d332749dd1ace55c76840fe10e772d9150
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Feb 16 13:32:02 2017 +0100

sci-biology/freebayes: use CDEPEND

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 456c869b7e5ae4d6efd1c2293b1181e59a5e6a67
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Feb 16 11:56:54 2017 +0100

sci-biology/freebayes: respect CC/CXX/CFLAGS/CXXFLAGS

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 5f3f4d9525b701b6643ecbdfa3835051201c6e25
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Feb 16 10:53:34 2017 +0100

sci-biology/freebayes: force compilation in a single thread as parallel build fails

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 34cc1e0894a7db5f6f6ce80372e3ca44e6eeaa6e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 9 00:06:32 2016 +0100

sci-biology/freebayes: fix package herd name

Package-Manager: portage-2.3.3

commit cb254becffa1b3891a42871345dfdf2977b134fa
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 2 22:45:13 2016 +0100

sci-biology/freebayes: note the many bundled deps we need to unbundle

Package-Manager: portage-2.3.2

commit 119a938243db6ec4fc221bc31435ad8c3b11a44c
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jul 27 13:03:37 2016 +0200

sci-biology/freebayes: adjust to current devel tree

Package-Manager: portage-2.2.28

commit 2a3502b66122751757dd86d441bd520d57e900cf
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Feb 14 18:30:14 2016 +0100

sci-biology/freebayes: Bump to EAPI=6

* Use git-r3.eclass

Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f214d7f47d30cf809d9c63801b80b215ab98d46f
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Jun 5 13:04:40 2015 +0200

sci-biology/freebayes: Add github to remote-id in metadata.xml

Package-Manager: portage-2.2.20

commit 4e4ed2d2a3189ee59a93d417d840a25527ca33bc
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Mar 13 13:33:03 2015 +0100

install also the vcftools binaries although it should be a separate package

Package-Manager: portage-2.2.15

commit c539619b5a6eed42d40d34c185d035ef5b3350c4
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 11 21:39:04 2015 +0100

added src_install()

Package-Manager: portage-2.2.15

commit e7341cf8c7b18b1d2288a690636b912fe7dd8870
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 11 21:25:51 2015 +0100

ebuild cleanup; the git clone --recursive flag does not work

Package-Manager: portage-2.2.15

commit 37ad6d45a24e84fb0dd6ac03f7325390c251d156
Author: Christoph Junghans <ottxor@gentoo.org>
Date: Tue Sep 16 11:27:37 2014 -0600

fixed DESCRIPTION

Package-Manager: portage-2.2.8-r1

commit 5c73aaa78d02e3b384be3b52120625ed8b507e19
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 24 02:41:35 2014 +0100

sci-biology/freebayes: a new package skeleton; need to retrive from git in a recursive way